Function reference

All functions

filter_merged()

filter_merged

final_func()

Strings all functions together.

k_clustering()

install.packages("Ckmeans.1d.dp") select k-cluster mean that is closest to the mean of your first and last rows without outliers

mean_without_outliers()

Remove the outliers from your first and last rows (upper and lower bounds) and find the mean Define numeric_vector

normalise()

Reads in dataframe of Promega data, and normalise.

expected_columns validate_plate_map() read_validate_plate_map() find_promega_plate_paths() get_read_date() generate_plate_map()

Read in and validates, or generate PlateMap following strict formatting as Example_PlateMap.xlsx

adding_technical_replicate_suffix() plateMap_map_onto_promega_read() validate_columns() convert_dilution_factor() generate_dilution_series() normalise_plate_using_plateMap()

map a single plate_map to a read promega_plate

read_promega_plate_excel()

Reading in Promega plate data, from the excel sheet format.

rotate()

Performs clockwise rotations (0,90,180,270 degrees)