Strings all functions together.
final_func.RdStrings all functions together.
Usage
final_func(
neut_xlsx_path,
control_neg_column = c(1),
control_pos_column = c(2),
control_plating = "column",
control_neg_wells = c("A1", "B1", "C1", "D1", "E1", "F1", "G1", "H1"),
control_pos_wells = c("A2", "B2", "C2", "D2", "E2", "F2", "G2", "H2"),
sheetname = "Results",
rotation_deg_needed = 0,
cluster = FALSE
)Arguments
- neut_xlsx_path
a file to normalise, where by default negative control is left most column, and positive control is second left column.
- control_neg_column
The column which negative/cell control are located (column number from left, integer,default=1)
- control_pos_column
The column which positive/cell control are located (column number from left, integer,default=2)
- sheetname
the sheet of the .xlsx file to read, default for promega excel file is "Results"
- rotation_deg_needed
degrees that dataframe needs to be rotated, default=0. Feeds into rotate.R
- cluster
if the k-clusters dependent anomaly detection is invoked, default=FALSE. Feed into normalise.R